Specialization of GoImageProcessor to handle LSM files. More...

#include <Code/IO/GoImage/GoLSMImageProcessor.h>

Inheritance diagram for GoLSMImageProcessor:

Collaboration diagram for GoLSMImageProcessor:

Public Member Functions
	GoLSMImageProcessor ()

virtual void	initTimePoint (const unsigned int &iTime)
	load all the channels for the given time point into the GoMegaImageStructure More...

virtual void	setDoppler (const unsigned int &iTime, const unsigned int &iPrevious)
	load all time points of the given channel into the GoMegaImageStructure. Called Doppler View. More...

void	setReader (vtkLSMReader *iReader)
	Set the reader. More...

virtual void	setTimePoint (const unsigned int &iTime)
	update images from the current GoMegaImageStructure More...

virtual	~GoLSMImageProcessor ()

Public Member Functions inherited from GoImageProcessor
vtkSmartPointer< vtkLookupTable >	createLUT (const double &iRed, const double &iGreen, const double &iBlue, const double &iAlpha)
	create a lookuptable (LUT) given r, g, b, a and range LUT will go from black to the color. More...

std::map< unsigned int, unsigned int >	getAlpha (const std::string &iName) const
	get points to update r, g, b and a TFs in TF editor. More...

unsigned int *	getBoundsChannel ()

unsigned int *	getBoundsTime ()

std::string	getChannelName (const unsigned int &iIndex)
	get name of a channel given its index. More...

std::vector< double >	getColor (const std::string &iName) const
	get color from channel name. More...

std::vector< vtkImageData * >	getColoredImages ()
	get all the visible images colored separately (N images). More...

unsigned int	getDopplerChannel ()

bool	getDopplerMode ()

unsigned int	getDopplerSize ()

unsigned int	getDopplerStep ()

std::vector< int >	getDopplerTime (unsigned int iTime)

int *	getExtent ()

vtkSmartPointer < vtkImageAccumulate >	getHistogram (const std::string &iName) const
	get histogram from 1 channel image More...

vtkSmartPointer< vtkImageData >	getImageBW (const std::string &iName)
	get raw (not colored) image given index More...

vtkSmartPointer< vtkImageData >	getImageBW (const unsigned int &iIndex)

vtkSmartPointer< vtkImageData >	getImageBW ()
	get first raw (not colored) visible image More...

template<class PixelType , const unsigned int VImageDimension>
itk::Image< PixelType, VImageDimension >::Pointer	getImageITK (std::string iIndex, bool iIsInverted=false)
	get an ITK image (vs vtkImageData) given its index More...

vtkSmartPointer< vtkLookupTable >	getLookuptable (const std::string &iName) const
	get LUT from channel name. Useful for the Transfer function editor. More...

vtkSmartPointer< vtkLookupTable >	getLookuptable () const
	get LUT of the first visible channel. Useful is we are in single channel visualization mode. More...

std::vector< int >	getLUTParameters (const std::string &iName)

int	getMaxImage ()

int	getMaxThreshold ()

unsigned int	getNumberOfChannels ()

unsigned int	getNumberOfTimePoints ()

unsigned int	getNumberOfVisibleChannels ()
	get number of visible channels More...

vtkSmartPointer < vtkPiecewiseFunction >	getOpacityTransferFunction (const std::string &iName) const
	get opacity from channel name. Useful for the transfer function editor while volume rendering. More...

std::vector < vtkPiecewiseFunction * >	getOpacityTransferFunctions ()
	get vector of visible opacity transfer functions. Useful for the transfer function editor while volume rendering. More...

unsigned int	getTimeInterval () const

vtkSmartPointer< vtkImageData >	getVisibleImages ()
	get all the -visible- images present in the containerl. Colors the image and combuine them into 1 image. More...

	GoImageProcessor ()

	GoImageProcessor (const GoImageProcessor &iE)

void	setColor (const std::string &iName, std::vector< double > &iColor)

void	setDopplerMode (const bool &iEnable, const unsigned int &iChannel)

void	setDopplerSize (int iSize)

void	setDopplerStep (unsigned int iStep)

void	setLUTParameters (const std::string &iName, int iGamma, int iMin, int iMax)

void	updatePoints (std::string iChannel, std::map< unsigned int, unsigned int > iPointsAlpha)
	store points from TF editor More...

void	visibilityChanged (std::string iName, bool iVisibility)
	change visibility of one channel given its name. More...

virtual	~GoImageProcessor ()

Private Attributes
vtkLSMReader *	m_LSMReader

Additional Inherited Members
Protected Member Functions inherited from GoImageProcessor
vtkSmartPointer< vtkImageData >	colorImage (vtkSmartPointer< vtkImageData > iImage, vtkSmartPointer< vtkLookupTable > iLUT)

Protected Attributes inherited from GoImageProcessor
unsigned int	m_BoundsChannel [2]

unsigned int	m_BoundsTime [2]

unsigned int	m_CurrentTimePoint

unsigned int	m_DopplerChannel

bool	m_DopplerMode

unsigned int	m_DopplerSize

unsigned int	m_DopplerStep

std::vector< int >	m_DopplerTime

int	m_Extent [6]

int	m_MaxImage

int	m_MaxThreshold

GoMegaImageStructureMultiIndexContainer	m_MegaImageContainer

vtkSmartPointer< vtkImageData >	m_Output

unsigned int	m_TimeInterval

Detailed Description

Specialization of GoImageProcessor to handle LSM files.

Definition at line 52 of file GoLSMImageProcessor.h.

Constructor & Destructor Documentation

GoLSMImageProcessor::GoLSMImageProcessor ( )

inline

Definition at line 55 of file GoLSMImageProcessor.h.

virtual GoLSMImageProcessor::~GoLSMImageProcessor ( )

inlinevirtual

Definition at line 56 of file GoLSMImageProcessor.h.

Member Function Documentation

void GoLSMImageProcessor::initTimePoint ( const unsigned int & iTime )

virtual

load all the channels for the given time point into the GoMegaImageStructure

Parameters

[in] iTime requested time point

Implements GoImageProcessor.

Definition at line 64 of file GoLSMImageProcessor.cxx.

void GoLSMImageProcessor::setDoppler	(	const unsigned int &	iTime,
		const unsigned int &	iPrevious
	)

virtual

load all time points of the given channel into the GoMegaImageStructure. Called Doppler View.

Parameters

[in]	iTime	requested central time point
[in]	iPrevious	-to be used for optimization?

Note: need to store parameters if we want to go through volume efficiently (not reload everything all the time)

Implements GoImageProcessor.

Definition at line 201 of file GoLSMImageProcessor.cxx.

void GoLSMImageProcessor::setReader ( vtkLSMReader * iReader )

Set the reader.

Parameters

[in] iReader Pointer to the reader

Definition at line 43 of file GoLSMImageProcessor.cxx.

void GoLSMImageProcessor::setTimePoint ( const unsigned int & iTime )

virtual

update images from the current GoMegaImageStructure

Parameters

[in] iTime requested time point

Implements GoImageProcessor.

Definition at line 154 of file GoLSMImageProcessor.cxx.

Member Data Documentation

vtkLSMReader* GoLSMImageProcessor::m_LSMReader

private

Definition at line 72 of file GoLSMImageProcessor.h.

The documentation for this struct was generated from the following files:

Code/IO/GoImage/GoLSMImageProcessor.h
Code/IO/GoImage/GoLSMImageProcessor.cxx

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation